 
             
            Read mapping
Variants calling
Variant annotation
No content

Somatic variants calling
Copy number variants (CNV)
Structure variants (SV)
Multisample variants calling
Integration site analysis

 
            Raw read processing
Read mapping + BQSR, VQSR
Variant calling (SNV, Indels)
Variant annotation
Somatic mutation calling (For cancer genome only)

Oncoplot
No content
No content
No content
No content

 
            Read mapping
Variant calling
Variant annotation
Clinical report
Genomic rearrangement
Tumor mutation Burden (TMB), Microsatellite instability (MSI)

